rs49081820 SNP Detail

Summary

• ID
  rs49081820
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33022803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGT TACAATCCAC AAACCCAATA
  M
  AACTGGGTAA TAAGGTCCCC AAGGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145476421	ENSMUSSNP551034	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
ss325363759	CHEV_17_32940774	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49081820					SNP	A	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33022803 () rs orientation: forward

Symbol	Name	Function Class
Gm55909	predicted gene, 55909	1038 bp downstream
Tssr147401	transcription start site region 147401	1869 bp downstream
Zfp811	zinc finger protein 811	within coordinates