rs49082338 SNP Detail

Summary

• ID
  rs49082338
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:83108894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACATTATGA AGAAAATTTA GGGCAGGAAC TAAAGAGAGG
  CTATGAAGGA AAACTGTTTA CTGCCCTGTT CTCTTTATCA GCTGACTTTT TTATATCACT
  M
  AGACTAGCTG CCCAGGGATG GCACCACCCA CAGAGGGTCA TCTTCTTGAT TAATGATTGA
  TATGGGAGGT CTCAGCCCCT GTTTATTATT TTTTTCTCA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145303930	ENSMUSSNP1673325	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322735889	CHEV_8_84906164	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49082338					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83108894 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Il15	interleukin 15			Intron
				Noncoding-Transcript-Variant
Rr666117	regulatory region 666117			1090 bp proximal
Tssr81960	transcription start site region 81960			1982 bp upstream
Tssr81961	transcription start site region 81961			1944 bp upstream