rs49082548 SNP Detail

Summary

• ID
  rs49082548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:25945850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTATTCA GTGGACATTT
  CGGTTATAAA CCTGGGCCAT AATCAGAGTC ATGGTCCCTA GTGTGTTGCA AAGGTAGACA
  TAGCTGTCCA GGGGGTTAGG AGCTAAAAAG TACCCGAACA GAGACAAAAT GAAGTTGGGG
  CAAGACCAGA ACAAGATGGC GTTGTTACCT CAGTCACTTT TCACTAACGT TGATATGGAA
  R
  TTTAACAAGA TCAAGATTTT TATTTTGGTG TTGATGACTC GGGGGTTGGG GGGAGGGGTA
  AAGTGCTTGT CATGAAAGGC CAATGGCTTT GATCCCTGGA ATCCACTGGA GGGAGAGAAC
  CCAATCCCCA AAGTTGTCCT CTGACCTCCA TATGGGCACC AGGGCACACA TGTGCCAAAC
  AGATAAAGTA AAAATACTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61129729	NES16639205	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49082548					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61129729	NES16639205	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:25945850 () rs orientation: forward

Symbol	Name	Function Class
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Rr608568	regulatory region 608568	1458 bp distal
Tssr50419	transcription start site region 50419	301 bp upstream