rs49082604 SNP Detail

Summary

• ID
  rs49082604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:126396084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTACATGA TCCCTCTCCC
  CCGGCCCCTC ATATTATATA GTAAAGACCC GAAGCTAGTG GGTTCCCATC CGTAGGGAAT
  TCTGCATCAA CTAACATAAC AGAGTCTTTT TGAAGACACA CCAGGGTGGT CAGATGTCAG
  GGTGGGAGGT GAGGGCTCTG GTGGGTGTTA GGGTGCACTG TCCCAATACA CTGAGAGTTC
  Y
  CCTACACCTG GGCGATGCAA GGTGGTCACG ATGGAAGCTG AGGTCAAACC TCCTGAGGCT
  TCAAGAAGCC ACAAGTCCGG TGAGGGCAGG ATGGCCTACT AGTGGTCATT GTGTGAGAGG
  ACAAAGAGAG GAAGGAGCCG GTGACAGAAG CTACAGCCTC TGACAGATGC ACAGCAACCA
  CAAAAAAGGT TGACTTGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss145888355	ENSMUSSNP5123416	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs49082604					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:126396084 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21286	CpG island 21286	8 bp proximal
Gm63868	predicted gene, 63868	within coordinates
Map10	microtubule-associated protein 10	473 bp upstream
Rr175263	regulatory region 175263	within coordinates
Rr186277	regulatory region 186277	116 bp proximal
Rr188607	regulatory region 188607	1659 bp distal
Tssr80077	transcription start site region 80077	483 bp upstream
Tssr83475	transcription start site region 83475	392 bp downstream