rs49082914 SNP Detail

Summary

• ID
  rs49082914
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24021761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATACTATG GAGATCGTAT
  ACTACATATG CTTCAGAAAA TCCTCATTCC CCAAGGCCCA GACTTCTCAA ATTATTAACC
  TCAATGACAC ATCCAACAGC TCCAGTCAGG AGCTTCAGTC AGGGCTTCCC ATTATGGAGA
  AGTGGTTTGT CCTCTTACAG CACTTAGAGT CAAACACAAA ACCAAAGGAG ATGCATTGAG
  W
  GCATAAAGCA AGACAGGACT TAAAGCCACA GTGAAGATGA GCTACCAGAA GAGCTCAGTG
  CACACAGAAC CCAGATTCCT TTCTGTGAAT GAGTTTGACA TCAGTGCTCA GGCTGAGTCA
  TAAGCCTAGG GGCCTCTGAG AGGTAGAGTT TTTTTGTTTT TTGTTTGTTT GTTTGTTTGT
  TTTTTGCCTA TACGAAACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148809498	ENSMUSSNP1137322	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss324292289	CHEV_13_23929647	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49082914					SNP	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24021761 () rs orientation: forward

Symbol	Name	Function Class
Gm56568	predicted gene, 56568	within coordinates
Rr475959	regulatory region 475959	864 bp distal
Rr475960	regulatory region 475960	1660 bp proximal
Rr475961	regulatory region 475961	1743 bp proximal
Slc17a3	solute carrier family 17 (sodium phosphate), member 3	1656 bp upstream
Tssr4011	transcription start site region 4011	1847 bp upstream
Tssr4012	transcription start site region 4012	1945 bp upstream
Tssr118873	transcription start site region 118873	868 bp downstream
Tssr118874	transcription start site region 118874	817 bp downstream
Tssr118875	transcription start site region 118875	1623 bp upstream
Tssr118876	transcription start site region 118876	1667 bp upstream
Tssr118877	transcription start site region 118877	1799 bp upstream
Tssr118878	transcription start site region 118878	1820 bp upstream