rs49083434 SNP Detail

Summary

• ID
  rs49083434
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:53873171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAGGTAAGG ACTTCAGTTA GATGTAGCCT AGTAAGGCTG
  CAGTTTCACA GCAGGTGTCA CTCCTTTGAG AAGAGACTTC TTTCTCTCTT GGCATTGCAT
  Y
  ACTCTGCGTT AAAAGGACAC AGAATCTGGC GAAACACATC TTGAGACATA AAATGCAACT
  TTAAGCATGA CTGGTAAGAG TATTTGCAAG GGAAAGCCCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62790764	NES17344581	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49083434					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62790764	NES17344581	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:53873171 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9316	CpG island 9316	599 bp proximal
Kat2b	K(lysine) acetyltransferase 2B	718 bp upstream
Rr339992	regulatory region 339992	within coordinates
Tssr5169	transcription start site region 5169	241 bp downstream
Tssr145221	transcription start site region 145221	593 bp upstream
Tssr145222	transcription start site region 145222	833 bp upstream
Tssr145223	transcription start site region 145223	1116 bp upstream
Tssr145224	transcription start site region 145224	1145 bp upstream
Tssr145225	transcription start site region 145225	1171 bp upstream