rs49083571 SNP Detail

Summary

• ID
  rs49083571
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:44232796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATTTTCG AAAAGTGGAA
  AGCATGGGCT TGTGCAACCC TTACTCTGTT GCTGGCACTA GAAAATGAAG TTGCACACAG
  TTGTGTGTTC TGAGGTCTGT GGTCCTCAGC CTTGTCACAT GGTGCAGCTG CTCTGCCAGT
  CCCATGTACT GTCTGCCAAC AACAAGCTCA AAGCTACTTG GTCCCTTTAT GCAGTCACAA
  M
  AGTAGTGTCT TGGGTGAGGA AAGGCTCCGC AGGTAAAGAT GCCTGGTGAT GTGAGTTCAG
  AACCCAAAGT GGAAAGAGAA GTCATTCTAC AGTTACCCTC TGCCTGCTAC GCATGTGCCG
  TGGCACATGC ACGTATGCAC ATACAATGCA CAAACAGCAA TAACGTTTTT AAGGAAAATA
  TTTTGAACCC TCCAGTTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52251177	NES15310183	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49083571					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52251177	NES15310183	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:44232796 () rs orientation: forward

Symbol	Name	Function Class
Atg5	autophagy related 5	within coordinates
Rr227723	regulatory region 227723	1397 bp distal
Rr227725	regulatory region 227725	206 bp proximal
Tssr93169	transcription start site region 93169	1592 bp upstream