rs49083856 SNP Detail

Summary

• ID
  rs49083856
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61760753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGATACAT ATGCAGCTAG
  AGACACAAGC TCCGGGGGTA CCGGCTAGCT TGGCGCTTTG TAAACACAGG CGTTGACAGC
  TGAAACCTGG CCTCCAGTGG AATTTACACT ATAGAAATTG GTAGTGCAAC AAAGCATCTT
  TCTACCCCAC AAACCGGTTG TTAAACATCT TAGTGCACCA CCGCTCACAT CTGTCCGGCT
  Y
  TCTTCAATCA CAAACATTTC CAGACGTTTC CAGGTTAAAA TGAATACCAG GGGCCTGGCC
  ATCCGTCTAT CTGTCTATCC GTCTGTCTGT CTCTACTGCA GAATGGAAGG AAGACCTCTA
  AGCAAAATGG CCAGCCACCA TCTTCCTCAG ATTGGCTATG GCAAATGCTC CTCACAGCCA
  AGTGACCTGA CTGTCAATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61280639	NES16779764	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49083856					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280639	NES16779764	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61760753 () rs orientation: forward

Symbol	Name	Function Class
Col13a1	collagen, type XIII, alpha 1	within coordinates
Gm30121	predicted gene, 30121	within coordinates
Rr223137	regulatory region 223137	724 bp proximal