rs49083868 SNP Detail

Summary

• ID
  rs49083868
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:101011066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGT TCACTCCTTT CCCCACTGAG
  R
  CACCAACTCC CTGGCTCTTA ATGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148929977	ENSMUSSNP4218005	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321627769	CHEV_5_101292219	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49083868					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:101011066 () rs orientation: forward

Symbol	Name	Function Class
Gm73351	predicted gene, 73351	791 bp downstream
Gpat3	glycerol-3-phosphate acyltransferase 3	within coordinates
Rr378349	regulatory region 378349	within coordinates
Rr615578	regulatory region 615578	1663 bp distal
Rr615579	regulatory region 615579	1174 bp distal
Rr615580	regulatory region 615580	1019 bp distal
Rr615581	regulatory region 615581	1127 bp proximal
Tssr47495	transcription start site region 47495	1179 bp downstream