rs49084457 SNP Detail

Summary

• ID
  rs49084457
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19117702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGA ATTAACAATT AAAAGTCCAG
  S
  AGAAGAGGAG GAGCGGAGAC TATCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148474303	ENSMUSSNP1004357	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
ss322117094	CHEV_7_19969126	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49084457					SNP	C	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19117702 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18481	CpG island 18481	1117 bp distal
Ercc2	excision repair cross-complementing rodent repair deficiency, complementation group 2	within coordinates
Gm26852	predicted gene, 26852	within coordinates
Rr400148	regulatory region 400148	1688 bp downstream
Rr643124	regulatory region 643124	1727 bp distal
Rr643125	regulatory region 643125	1759 bp distal
Tssr64844	transcription start site region 64844	1725 bp downstream