rs49084623 SNP Detail

Summary

• ID
  rs49084623
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129914955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GCCAGGACTT GAACTCAGGA CCTTCCAAAG AACAGTCAGT
  GCTCTTACCT GCTGAGCCAT CTCGCCAGCC CATAAAATAA ACTAAGAAAA AAAAAATCTT
  W
  AAAAAAAAAA AAAAAGTGGG GGCCGGGTTA GGTGCCGTGG GCAAGGTCTG GTAGCCCATA
  CCTTTAATCC CAGTCCTTGG GAGGCAGAGG CGGGCAGCCT C                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144477319	ENSMUSSNP6237266	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49084623					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129914955 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	within coordinates
Cpgi16684	CpG island 16684	853 bp proximal
Rr399383	regulatory region 399383	1094 bp upstream
Rr621372	regulatory region 621372	91 bp proximal
Rr621373	regulatory region 621373	1346 bp proximal
Tssr53498	transcription start site region 53498	1025 bp downstream
Tssr53499	transcription start site region 53499	1174 bp downstream
Tssr53500	transcription start site region 53500	1302 bp downstream
Tssr53501	transcription start site region 53501	1328 bp downstream