rs49084843 SNP Detail

Summary

• ID
  rs49084843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127273124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGCCCTC CTGCTAGGCA
  CTTCTTAAGG TTCCATCATT TTCCTAAAGC ACCACACGGA GGCCAAGTCT TTACCAGATG
  GTCCTTTGGG GGCAGGGCAC TTACGATGCA AACTAGAACA CTCTGTAATA TTCCATGGTG
  GGTACAACAA CTCTCCCACT AGAAATGCAC GACCTCCACT CCTGCCAATA CTGCTGGAAG
  Y
  AAGCTGCTTA ACAATCTCAA AGGACTGTGA TAGTTATGGA TTCTCATATG GAAAGGAGGC
  CACGTCTTGG AACCTTCACC ACGAGATGTT TTTCTTGTAG TGATTCTCAA GGTCTTGGTA
  GGCATTGGAG CTGGTCCTTT CACTTTCAGG TTCTTTCTTT CTTTCTTTTC TTTCTTTTCT
  TTCTTTTCTT CCTTCCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61079344	NES16587426	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	T	C	C	C		C	C	C		C
ss135864417	ENSMUSSNP172377	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					C
ss320954478	CHEV_3_127182393	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs49084843					SNP	T	T	T	C	T	C	T	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61079344	NES16587426	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127273124 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42525	predicted gene 42525	704 bp downstream
Gm43355	predicted gene 43355	within coordinates
Gm54939	predicted gene, 54939	1645 bp upstream