rs49085454 SNP Detail

Summary

• ID
  rs49085454
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164267727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGAATCTGT CCTCCGAAGA CAGGAACCAG GCACACCAAT
  GGGAATGATG AGTCACAGCA CTCCAACAAC AACAACAAAA CAACCCGATC CCACTGACAA
  R
  CTAGCAGGGG ATTTGGGTAG GAGGGACAAA TAAGAAGCAG CAATGTATTA ACTGGGGACC
  AAAATATTGA AGGAGTCAAT GTCCGTCACA GAACAGGAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145978650	ENSMUSSNP754694	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49085454					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164267727 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Tssr9784	transcription start site region 9784	1651 bp downstream
Tssr14738	transcription start site region 14738	1963 bp upstream
Tssr14739	transcription start site region 14739	1779 bp upstream
Tssr14740	transcription start site region 14740	1738 bp upstream
Tssr14741	transcription start site region 14741	1661 bp upstream
Tssr14742	transcription start site region 14742	1619 bp upstream
Tssr14743	transcription start site region 14743	1400 bp downstream
Tssr14744	transcription start site region 14744	1449 bp downstream