rs49085612 SNP Detail

Summary

• ID
  rs49085612
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24826345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGCCTACT GAACCTTAGC
  CCAGGACGGA CGGCTTCTGT GCACCTGCTA GAGACTGCAC CATCCCCCAC TTTCAGCCTC
  CTCTAACTAA AACCTTAGGA TTCTGAGCCT GAGCCTGCTC CAGAACAAGC CTGATGGATC
  CATCTGTTTG CCCATTTGCT TTGGGAATCT TCACTACAAA AGTCCCCTAC AGACTTAGGA
  Y
  GAGGTCTCCT TGTCACCTGA GGTGCTGCAG CGAGAAAGGA AACGGGAGTC CCAACTTTTC
  CGAGACTCCC AGTATCGATG TGGGCATGCC CTCACTGTGC TTGTTTCAAG GATATTGGTG
  GCAGGTGACT TGTTCACAGT CACCATGTGG CTCTAACACT CGGAGCCAAG CTTGTCTTAC
  TCAGCTGGCA AAGCCCTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148097858	ENSMUSSNP5265170	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49085612					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24826345 () rs orientation: forward

Symbol	Name	Function Class
Gm71653	predicted gene, 71653	590 bp upstream
Rr608374	regulatory region 608374	881 bp distal
Rr608375	regulatory region 608375	1546 bp proximal
Smarcd3	SWI/SNF related BAF chromatin remodeling complex subunit D3	within coordinates
Tssr50355	transcription start site region 50355	1299 bp downstream
Tssr50356	transcription start site region 50356	1312 bp downstream