rs49086576 SNP Detail

Summary

• ID
  rs49086576
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:121153102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGATACCC TCTTTGAATG
  CTGTGGTCAC CAGTCATGCA CATAGTACAC AAACATATGT GTGGGCAAAT ACTCATACAC
  ATGAAATAGA ATAAATTTAA AATGACATTT ATTGCCAGGT GTAGTGGTAC ACACCTTTAA
  TTCCAGTACT TAAGAGGCAG AGGCAGGTGG ATCTCTGAGT TCAAGGACAG CCTGCTCTAC
  A
  TAGAAAGTTC ATTTTGTTTA TATCTGTGCC TTGCTTGCAT TTGCTACAGC ACAATGGAGG
  CCAGAGGACA ACTTGCTGGA GTCAGTTCTT TCCGCTGTGT GGGTCCTGGG TGTCAGACTC
  AGATCATCAG ATGTGGCAGC ATGGGCCCTT ACCAGTAATT TGTCTTGCTG GCCTACAAGC
  TATTTTTTAT TGTTATTTTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss132910513	ENSMUSSNP553798	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs49086576					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121153102 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi4342	CpG island 4342			1251 bp distal
Foxk2	forkhead box K2			Intron
				Noncoding-Transcript-Variant
Tssr106400	transcription start site region 106400			1076 bp downstream