rs49087518 SNP Detail

Summary

• ID
  rs49087518
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66904432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAG GAAGTGAAGA GTGCTTATGG
  C
  TGAGGAGGGC AAAAATACAT ATTCA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144520465	ENSMUSSNP819607	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss319758765	CHEV_1_66911847	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49087518					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66904432 () rs orientation: forward

Symbol	Name	Function Class
Acadl	acyl-Coenzyme A dehydrogenase, long-chain	1996 bp upstream
Cpgi339	CpG island 339	1534 bp distal
Gm25832	predicted gene, 25832	1524 bp upstream
Rr412479	regulatory region 412479	1506 bp distal
Rr412480	regulatory region 412480	459 bp proximal
Rr412481	regulatory region 412481	1567 bp proximal
Tssr12012	transcription start site region 12012	1988 bp upstream
Tssr12013	transcription start site region 12013	1976 bp upstream
Tssr12014	transcription start site region 12014	1958 bp upstream
Tssr12015	transcription start site region 12015	1938 bp upstream
Tssr12016	transcription start site region 12016	1923 bp upstream