rs49088534 SNP Detail

Summary

• ID
  rs49088534
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153536710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCGAATCC CAGCAACCAC
  ATGGTGGCTC ACAACCATCC GTAACAAGAT CTGACTCCCT CTTCTGGTGT GTCTGAAGAC
  AGCTACAGTG TACTTACATA TAATGATAAA ATAAATAAAA TTTAAAAAAA AAAAAAAAAA
  AAAGAATACA CAGTGTAGAG TTGAGGGGAA GAGAAGATTT GAGCCCTAGA GAAGGATGGA
  C
  GAGAGACGAC AAATGTCAGT CAGCTACCCA TCAGACAAGT GAGACAGTTA CTGTGACAGA
  TGCCTGGGAT GGAGCAACTT AAAAAGCCGA GCTGTTCCTG CTCTTGCAGG TGTGGCTGCT
  GTGTCACATG GATGTCAGTA GGTGGCAGAG GGGAGAGAGG CTATGTCTAT GCTGAGTGTT
  CTGACCTTCA GACATCTGAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136113942	ENSMUSSNP4558086	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49088534					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153536710 () rs orientation: forward

Symbol	Name	Function Class
Gm25757	predicted gene, 25757	97 bp upstream
Rr587767	regulatory region 587767	463 bp distal
Rr587768	regulatory region 587768	320 bp distal
Rr587769	regulatory region 587769	129 bp distal
Rr587770	regulatory region 587770	within coordinates
Rr587771	regulatory region 587771	131 bp proximal
Rr587772	regulatory region 587772	737 bp proximal