rs49089221 SNP Detail

Summary

• ID
  rs49089221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:91397290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAGGTTT AGAGTAGGGC
  CCCAAGTGCT AGGATGAACC ACAGGTACTA AGAGTTGTCC CAAGTTTCTC TGGGGCCTGA
  CATGAATACA ACAGTAAAGT TATCTGTGAT TTTGCAAATT GTCTAGCCCT TTCTTATTGT
  TAGATTAGGA GTGACATTCT CACAAGCCTA GCCTTCCTCC ACAAAAGTTT GTAGTTGAAT
  Y
  GAAAAAGTCA GACTAGAAAT GTAAAGTAGT GTCAACCTAG TGTAAGGGTT TGAAGAATAA
  ATATTTTGGA AAAACACATA TGTGTGTGTC CATGTGCACA TGTGTAAAAA GAACCATTAC
  CTAAAATATA ATGTGTCAAA TCAAAAGCTT TACACTTCAT TTACTCTTCA TTTGGTGACC
  AAGTCTTCTC TACCTTTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52679878	NES15527305	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49089221					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52679878	NES15527305	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:91397290 () rs orientation: forward

Symbol	Name	Function Class
Gm41014	predicted gene, 41014	1150 bp downstream
Gm47381	predicted gene, 47381	722 bp upstream