rs49089247 SNP Detail

Summary

• ID
  rs49089247
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70874306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGCTGCA GGTCCAGAGC
  TGTATAACGT GAAGTATCAT CCTCTCCACT GCATTCAGCA AACACTAAAC ACATCCTAAG
  CAAAATGTGG TACTGGGCAG TTGCTTGCTC CACTGTTGAT GGCAGAGAAT AGATAAGGGC
  TCTGGTCAGA CCTGGTGCAG CCTGGGTAAG ATCCTTTCAG TCCTCTTCTG AAGAAGGCCA
  Y
  GAGTAGCTAT GACCTTGGAG TGGGAGTCAG AGCAGGGGCT GAGTTTCCTA GTTCTGTTCA
  TCCTGACTTT AGCATACCTG GTCCAGCTCC CCTGTCATTG TTTTCCCTGA GAACAGAGTC
  TCAGACAGAC AGTGGCTGCT CCATTCACTC CTCTACAAGC TCACAGTTCT GTCCAGTCTT
  CAGAAGGCTG TCTTTCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52652721	NES15474554	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		C	T	T	C		T
ss324416294	CHEV_13_70865065	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49089247					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52652721	NES15474554	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70874306 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	1615 bp downstream
Gm36607	predicted gene, 36607	within coordinates