rs49089838 SNP Detail

Summary

• ID
  rs49089838
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3188580 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TACATTCTGT CAGGATCTTT
  CAATACCATA AGATCAGATA ACCGTTCCGG AGAATAATCT CACATAGGAA ACACAAGGAT
  TTCAAAGCAC AGAGCTGACA GTTATGCATG TCTCAGAACA GAACTGATAC CGGAGTGTTA
  ATAGGCCTGG TGAGTTGACT CAGCAAGGAA AACCACTTGC TGCTACATCT GATGTGGTTT
  S
  CTACTCAGAA CCTATGGGGA GCCAGGCAAA CCCAAGACTT TTTCAGATGC CCTGATGAAA
  GGACAGAGAG GAACCTTAGT TCTGTGTATG TGTCTTGACA TAGCCCATCT AGAGCTGGAG
  CCCCGGCCTC AAACGAATCA TTCTTAAGGT TTCCTGGGGA AACAACTCTG CTCCCTGGGC
  TGTGGTTGTC AGTCCTAAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146753827	ENSMUSSNP403345	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49089838					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3188580 () rs orientation: reverse

Symbol	Name	Function Class
Rr230143	regulatory region 230143	within coordinates