rs49090103 SNP Detail

Summary

• ID
  rs49090103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:99551584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATGG TTGGGGGGGT CATCATGATC
  Y
  GAGGGACTGT ATTAAAGGGT CCCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss137990970	ENSMUSSNP5290156	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss324135506	CHEV_12_100823535	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49090103					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:99551584 () rs orientation: forward

Symbol	Name	Function Class
Gm26839	predicted gene, 26839	within coordinates
Gm53755	predicted gene, 53755	within coordinates
Rr269924	regulatory region 269924	1941 bp proximal