rs49091459 SNP Detail

Summary

• ID
  rs49091459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127344938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGGAGGA AGGGAGTATA
  GTATGTTCCC TGGATGCTCC ACCAAATTGT CAGGTTTTGA AAATCCAAGG CTGGTGTGAA
  TAGTCAGACT TGCTCTCGCT AGACTAGGCT AGGCTTCTGC TGGAAGTGAA GAAAAAGCCG
  GACTGGAATC TCCAGCCCAG TGCCCCCGTG GTTGGGAAAA TAGCATGGCA GAAGTAGGTA
  Y
  GTCCGCTAGA CCATGCCCAT TTAGCCCTTG TAATTCTGAA CCTGGCTCAG AGCCCAACTT
  GGCCACCAGG GGGCGATGCA AGATCTCAGT TGGAGAGAGA GGGATGGGGA GGGGCTGGAG
  GGGTGGCTAA GGGGAGAGAA CCGGAGACAC CAAGCCTGAG ACCCTAGGCC TGGGAGGGGG
  TGGGGTGCGT GCCGTCTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61334365	NES16949412	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49091459					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61334365	NES16949412	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127344938 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2359	CpG island 2359	743 bp distal
Cpgi2360	CpG island 2360	175 bp proximal
Rr402328	regulatory region 402328	404 bp downstream
Rr402329	regulatory region 402329	within coordinates
Rr440928	regulatory region 440928	59 bp proximal
Rr440929	regulatory region 440929	671 bp proximal
Stac3	SH3 and cysteine rich domain 3	246 bp downstream