rs49093703 SNP Detail

Summary

• ID
  rs49093703
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:87753878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAT ACCAGGTCGC CCTGGACAAC
  R
  GATATGGGAA TTTCAGTGTT ACATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144885065	ENSMUSSNP7247392	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss319829838	CHEV_1_89722731	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49093703					SNP	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87753878 () rs orientation: forward

Symbol	Name	Function Class
Rr371669	regulatory region 371669	196 bp upstream
Rr414853	regulatory region 414853	1178 bp distal
Rr414854	regulatory region 414854	1083 bp distal
Rr414855	regulatory region 414855	902 bp proximal
Rr414856	regulatory region 414856	1536 bp proximal
Rr414857	regulatory region 414857	1782 bp proximal
Sag	S-antigen, retina and pineal gland (arrestin)	Intron