rs49093707 SNP Detail

Summary

• ID
  rs49093707
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:103206078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTT AAAAAAATGT TTCTCTGTCT
  T
  CAAAAAAAAA ATATAAATAG GAGCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147416522	ENSMUSSNP1198178	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs49093707					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:103206078 () rs orientation: forward

Symbol	Name	Function Class
6430590A10Rik	RIKEN cDNA 6430590A10 gene	948 bp upstream
Cpgi2165	CpG island 2165	1252 bp distal
Gm66970	predicted gene, 66970	1551 bp upstream
Rr385217	regulatory region 385217	268 bp downstream
Rr438424	regulatory region 438424	1754 bp distal
Rr438425	regulatory region 438425	1253 bp distal
Slc6a15	solute carrier family 6 (neurotransmitter transporter), member 15	within coordinates
Tssr95607	transcription start site region 95607	871 bp downstream
Tssr95608	transcription start site region 95608	836 bp downstream
Tssr99159	transcription start site region 99159	1148 bp upstream