rs49094648 SNP Detail

Summary

• ID
  rs49094648
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70412789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAAAATGT CAGTATTGGG GGCTAGAGAA ATGGCTTAGC
  CAGTAAAGTA CTTGAGGTGA AAAACAGGGT TAGGATCCCT TATCACCTAT ATAAAAGCAG
  K
  GTGGGCACCT GATGTGGTGG CTCATGCCTT TAATCCCAGC ACTCGAAGGC AGAAGCAGTC
  AGATCTCTGT GAGTCCCAGG CCAGTCAGAG TTATGTAGT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132372232	ENSMUSSNP3382680	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
ss323735943	CHEV_11_70335465	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49094648					SNP	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70412789 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3187	CpG island 3187	1268 bp distal
Gltpd2	glycolipid transfer protein domain containing 2	1227 bp downstream
Rr450319	regulatory region 450319	1723 bp distal
Rr450320	regulatory region 450320	1406 bp proximal
Rr450321	regulatory region 450321	1606 bp proximal