rs49096701 SNP Detail

Summary

• ID
  rs49096701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:99664537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGATCTC TTAGGCCAGC
  CTGGTCTACA GAGCAAGATC CAGGAAAGCT AGGGCTACAC AGAGTGGGGT AGGGCACACA
  AGCTGCTCTT AGTAGATGTG GGGAAAACTG GGGTGGGTAG ATGGGGTGCT ATGTAGTAGA
  GATACCAAGA CTTCATAAGA GGAAGAAGGA AGACAGGAAA AAGCTGGGCA AAGTGATGCA
  Y
  ATCATTAATT CCAGCACTGG TGAAGTAGAG ACAGGGTGAG TTCAAGGCCA GCCTGGTCTA
  CAGAGTTGAG TTCTAGGACA GCCAGGACTA CACAGAGAAA CTCTGGTGAA GCAGAGAGAA
  AGACAAGCTA AAAACATATG CCAAGAAATT GTGGTGTTAC ACATCTTTAA CCCCAGCACT
  CTGATAGCAG AGGAGATGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148470427	ENSMUSSNP3336758	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325081762	CHEV_15_99597087	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49096701					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:99664537 () rs orientation: forward

Symbol	Name	Function Class
Cers5	ceramide synthase 5	within coordinates
Gm17058	predicted gene 17058	within coordinates