rs49098044 SNP Detail

Summary

• ID
  rs49098044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26051273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCCAGGA AGAAGTGCGC
  CTTCACAGAC TGCCCGTCCA GCTCCAGGGC TCGCCGGCAG TCAGCAAGTG CCTGTTCAGG
  CTGCTGCATC TTCAGATAGC ACAGGGCCCG GTTAGTGTAG TACACTGCCA CAAGTGGGTT
  CCGAGTCTGG GGACCAAGAC CAGGCGTCAA AGAGTGTGGG CTCAGTTGAT CCCCTCTCAT
  Y
  TAGCAAGCTG AAAGCCAATG ATCTGGTCAA TGCTCCAGCT TTGGGGGCCC ATGGCTGGAA
  TAGAGGAACT GGAGATTTCC GAATTATCAA GAGCTCTGGA TTCTGGCCAT GCTTTCTTGC
  CTCCAACTGC TTTTGAGAGA AATCCCACAA CCCCTCTACA AGCTCTGGGC TTGGAAATCT
  CAAGGGGCAA GAGCTCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60255648	NES15703160	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49098044					SNP	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60255648	NES15703160	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26051273 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8785	CpG island 8785	within coordinates
Gm56915	predicted gene, 56915	384 bp upstream
Jmjd8	jumonji domain containing 8	456 bp downstream
Mir3082	microRNA 3082	871 bp upstream
Rr405106	regulatory region 405106	519 bp upstream
Rr523679	regulatory region 523679	632 bp proximal
Rr523680	regulatory region 523680	1052 bp proximal
Stub1	STIP1 homology and U-Box containing protein 1	within coordinates
Tssr143193	transcription start site region 143193	808 bp upstream
Tssr146863	transcription start site region 146863	569 bp downstream
Tssr146864	transcription start site region 146864	591 bp downstream
Tssr146865	transcription start site region 146865	1066 bp downstream