rs49099872 SNP Detail

Summary

• ID
  rs49099872
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19308365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT ATGGGTCCTG GTGCCTGCCT
  R
  TCTTGGCTAC CAAAAAGGCC AAGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148479130	ENSMUSSNP6851953	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss322117468	CHEV_7_20159789	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49099872					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19308365 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	774 bp distal
Gemin7	gem nuclear organelle associated protein 7	1097 bp upstream
Rr380485	regulatory region 380485	within coordinates
Rr643193	regulatory region 643193	1483 bp distal
Rr643194	regulatory region 643194	297 bp distal
Rr643195	regulatory region 643195	782 bp distal
Tssr70933	transcription start site region 70933	1077 bp upstream
Tssr70934	transcription start site region 70934	1063 bp upstream
Tssr70935	transcription start site region 70935	1037 bp upstream
Tssr70936	transcription start site region 70936	595 bp upstream