rs49100474 SNP Detail

Summary

• ID
  rs49100474
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135253881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT TTCAGCCCTG GGAACCAAAC
  W
  CAGGGCCTCT CACATGCCAT GGGAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145530801	ENSMUSSNP1606486	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A		T
ss319989143	CHEV_1_137222720	CHEVERUD	SCREENING_POP	f	SNP				A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49100474					SNP	A	A	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135253881 () rs orientation: forward

Symbol	Name	Function Class
Gm41956	predicted gene, 41956	1477 bp upstream
Lmod1	leiomodin 1 (smooth muscle)	within coordinates
Rr12584	regulatory region 12584	1281 bp distal
Rr28593	regulatory region 28593	within coordinates
Tssr8958	transcription start site region 8958	1323 bp downstream
Tssr8959	transcription start site region 8959	1287 bp downstream