rs49100706 SNP Detail

Summary

• ID
  rs49100706
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170785997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTT AGAAGGAAGC CACTCCCACA
  R
  AACTAGCTCT CTGCTGTGGG CTAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146148875	ENSMUSSNP1034309	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320114974	CHEV_1_172888559	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49100706					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170785997 () rs orientation: forward

Symbol	Name	Function Class
Fcgr2b	Fc receptor, IgG, low affinity IIb	189 bp downstream
Gm70986	predicted gene, 70986	112 bp upstream
Rr20517	regulatory region 20517	404 bp proximal
Rr20518	regulatory region 20518	1004 bp proximal
Rr20519	regulatory region 20519	1403 bp proximal
Tssr284	transcription start site region 284	1466 bp downstream
Tssr14949	transcription start site region 14949	467 bp downstream
Tssr14950	transcription start site region 14950	1311 bp downstream
Tssr14951	transcription start site region 14951	1389 bp downstream
Tssr14952	transcription start site region 14952	1646 bp downstream
Tssr14953	transcription start site region 14953	1661 bp downstream