rs49100896 SNP Detail

Summary

• ID
  rs49100896
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14528200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGGACAT TGGGGTGGGG
  TTCACTTCCC ATAAAACATT TTGCCTTTAA GGGAGGGGGT GGGTACCCAG CTGGGAAGCA
  CTAGGAGAAG TGCAGTGCCA AAAGATAAGA GTAGCTGACT ACTACTGTCC AGAACGTTCC
  CCTGTGGAGA GTACCAGAGA AACAAAAGAG GGCCTGGGTC CTCAAGGAGC CAGGGCCTAA
  S
  TGGTGCAGAG GCCGGCCACG TGATTTGCCG TGCAAGGCCA ATCTAGGCAG GAGATGACCT
  TGACACATGT GACCCAAAAC AGAACAGGCT AAGTGCTCCA CTTGCTGACA TTGCTTGCCT
  TGGGCTTAAT TACAGAGCCT TAGTGCCAGT TGCAACTGTG TTTTTCCCTT CAAGAGGACA
  AACAGAAACG TGGTGAGAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62080631	NES17154313	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49100896					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62080631	NES17154313	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14528200 () rs orientation: forward

Symbol	Name	Function Class
Flnb	filamin, beta	within coordinates
Gm62553	predicted gene, 62553	within coordinates
Rr487922	regulatory region 487922	1571 bp distal
Rr487923	regulatory region 487923	within coordinates
Tssr124220	transcription start site region 124220	75 bp upstream