rs49101328 SNP Detail

Summary

• ID
  rs49101328
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25947696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCTGCCA CCAGCTGGAC
  TTCTCCACCA GTGGGGCACT GTGCGTAGCC CTGAATAAGG CAGCTGCGGG CAGTGCTTAT
  AAATGCTTCA AGGAACGGCG AGTCACCAAA GCCTACCTGG CACTGGTAAG TCCTGGCCAG
  TTCCTGGGAT GCTGTGTGGA GACCCAAGGC TCACAGCCTA CTCCAGCAGG CCTCTCAACT
  S
  AAGCTCCGTG CCAGGCTTAT GTGCCTATCT AGAGCTCAGC CACATTCCTC TCAGAGATGA
  CAGTGTGGCC CAGTGAGCTG CATGTGATGT CCTTGCTCGA CAGGTCCGAG GCCATGTCCA
  GGAAAGCCAA GTGACGATCA ACTATGCCAT TGGCAGGAAT AGCACGGAGG GGCGGACGCA
  TACCATGTGC ATCGAGGGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60255831	NES15704477	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49101328					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60255831	NES15704477	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25947696 () rs orientation: forward

Symbol	Name	Function Class
Chtf18	CTF18, chromosome transmission fidelity factor 18	1287 bp upstream
Cpgi8774	CpG island 8774	887 bp distal
Rpusd1	RNA pseudouridylate synthase domain containing 1	within coordinates
Rr339369	regulatory region 339369	within coordinates
Rr405102	regulatory region 405102	919 bp downstream
Tg(CD3E)26Cpt	transgene insertion 26, Cox Terhorst	within coordinates
Tssr143173	transcription start site region 143173	925 bp downstream
Tssr146846	transcription start site region 146846	1359 bp upstream
Tssr146847	transcription start site region 146847	1296 bp upstream