rs49101720 SNP Detail

Summary

• ID
  rs49101720
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22714377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAGAAGA AAAGGAAACA
  TTGGCTGGAA GAACTGGCAG GGGTTCTAGA ACTTATGGAG CCCTAAACTC TCAGCAGCGC
  TGTCCCAAAC TGAGCCAGTT CAACATAGGT CAGCCACAGG CAGAAGGCAG GTAACACCCT
  GGCCTCCTGG CTTTACCTAA CACTTAATAG CAGGGCTCTC TGTTCAGACA CAATACATTC
  M
  CCGGGTGCCA CACGTTTACA CCCTGCCAGT AACATCTGCC GCAGTCTGGG AATCAACACT
  AACAAAGGTA TGGGCAAATA CTGGAAGGTT CCTAATCTGC CTTTCAAATC CAGGTTTTGA
  GGTTGGGAGG GGACCATCTA ATTGTATAGC CAAAGCAACT ATTTGAGTGC AATAGACTTG
  AGATGTTTAA GGAAGCTGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63681313	NES17064332	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49101720					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63681313	NES17064332	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22714377 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	1241 bp upstream
Rr513336	regulatory region 513336	1297 bp distal
Rr513337	regulatory region 513337	831 bp distal
Tssr4819	transcription start site region 4819	286 bp downstream
Tssr4820	transcription start site region 4820	320 bp upstream
Tssr137563	transcription start site region 137563	1386 bp downstream
Tssr137564	transcription start site region 137564	1356 bp downstream
Tssr137565	transcription start site region 137565	1219 bp downstream
Tssr137566	transcription start site region 137566	1210 bp downstream
Tssr137567	transcription start site region 137567	842 bp downstream
Tssr137568	transcription start site region 137568	811 bp downstream
Tssr137569	transcription start site region 137569	790 bp downstream
Tssr137570	transcription start site region 137570	773 bp downstream
Tssr137571	transcription start site region 137571	435 bp downstream
Tssr137572	transcription start site region 137572	336 bp downstream
Tssr137573	transcription start site region 137573	326 bp downstream
Tssr137574	transcription start site region 137574	307 bp downstream
Tssr137575	transcription start site region 137575	297 bp downstream
Tssr137576	transcription start site region 137576	373 bp upstream
Tssr137577	transcription start site region 137577	795 bp upstream
Tssr137578	transcription start site region 137578	866 bp upstream
Tssr140504	transcription start site region 140504	1235 bp upstream
Tssr140505	transcription start site region 140505	1186 bp upstream
Tssr140506	transcription start site region 140506	766 bp upstream
Tssr140507	transcription start site region 140507	403 bp upstream
Tssr140508	transcription start site region 140508	361 bp upstream
Tssr140509	transcription start site region 140509	343 bp upstream
Tssr140510	transcription start site region 140510	295 bp upstream
Tssr140511	transcription start site region 140511	281 bp upstream
Tssr140512	transcription start site region 140512	930 bp downstream
Tssr140513	transcription start site region 140513	941 bp downstream
Tssr140514	transcription start site region 140514	974 bp downstream