rs49102252 SNP Detail

Summary

• ID
  rs49102252
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16188028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGG CTTGCTGATG CAGAGCTCCA
  Y
  CCCCCAACTC CCCGCAGCTT TTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148386788	ENSMUSSNP5867457	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss322110716	CHEV_7_17039452	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49102252					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16188028 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18377	CpG island 18377	566 bp distal
Cpgi18378	CpG island 18378	906 bp proximal
Npas1	neuronal PAS domain protein 1	1615 bp downstream
Rr400123	regulatory region 400123	1185 bp downstream
Rr642666	regulatory region 642666	1683 bp distal
Rr642667	regulatory region 642667	1314 bp distal
Tmem160	transmembrane protein 160	within coordinates
Tssr64613	transcription start site region 64613	1135 bp downstream
Tssr64614	transcription start site region 64614	1072 bp downstream