rs49103174 SNP Detail

Summary

• ID
  rs49103174
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:24790738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGA TGAGAGGCCG GGCTTCTCTA
  R
  GCCTAGGTAA CATTAGGTGG ACTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146998835	ENSMUSSNP2701675	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss323275258	CHEV_10_24634646	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49103174					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24790738 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	367 bp downstream
Med23	mediator complex subunit 23	1380 bp downstream
Tssr92746	transcription start site region 92746	780 bp upstream
Tssr92747	transcription start site region 92747	853 bp upstream
Tssr97085	transcription start site region 97085	652 bp downstream
Tssr97086	transcription start site region 97086	698 bp downstream
Tssr97087	transcription start site region 97087	732 bp downstream
Tssr97088	transcription start site region 97088	790 bp downstream
Tssr97089	transcription start site region 97089	809 bp downstream
Tssr97090	transcription start site region 97090	840 bp downstream
Tssr97091	transcription start site region 97091	1231 bp downstream
Tssr97092	transcription start site region 97092	1251 bp downstream
Tssr97093	transcription start site region 97093	1275 bp downstream
Tssr97094	transcription start site region 97094	1291 bp downstream
Tssr97095	transcription start site region 97095	1305 bp downstream
Tssr97096	transcription start site region 97096	1570 bp downstream
Tssr97097	transcription start site region 97097	1844 bp downstream
Tssr97098	transcription start site region 97098	1992 bp downstream