rs49103757 SNP Detail

Summary

• ID
  rs49103757
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9466043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGGCAG AGAGGGGTTT
  CAGTTCTCCA GGGGCCAGGA GAATCACTGT CACACCCGTG GGGCAGTCCT GGCTGGAGGG
  GGCTGGGCAT CGGCCCAGAT CCTCAATAAG TCAACGGTAA CTTCTTTTAT CCTCAGGCCA
  GGTAGCTGCT TCCTGGTGGT GGGGTTTAAC TTTTCTCTCC TGTGTTTACA ATTAGGAAAA
  R
  AAGCAGCACA CGCTTGTGGT AAGCAAACAC TACAAGTTGG CACGTGATGT CATGTGATAA
  ACACACTTGG GGCTGCCTCC AGGTGAAGAC AGAGCCAAGA CTTCCTGTTT GCTCTTCAGA
  ACTCAGGCAG AAGCCTGACC TATAGCCATG TCTATCCTTG GTATATATAT TCACATACAT
  GGACATTGTG CATACTTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60369246	NES15871153	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49103757					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60369246	NES15871153	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9466043 () rs orientation: forward

Symbol	Name	Function Class
Gm55345	predicted gene, 55345	1192 bp upstream
Rr69254	regulatory region 69254	243 bp distal
Rr82079	regulatory region 82079	within coordinates
Rr374488	regulatory region 374488	920 bp downstream