rs49103835 SNP Detail

Summary

• ID
  rs49103835
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31352120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTGTGCA ACATATGCCT
  GACTTGGAGA GTCAGGCAAT TCCTGGCCAA GAAACAAAAA GAAAAGTGTT CCATTCCCCC
  AGTGGATTCT GAGGAAAACG GGTTTTTAAA AAAGCAGGTA CAACTCTTAA GCTGCTGAAG
  GAGAGACAAG CAGGGTCTGG AAGGATCACT GGCTGTACTC TGGTGAGTAC TTACGCTGAC
  R
  TAGCTATCCA TTCTACCAGA GGGAGTTGGT TTTTTGTTTT TGTTTTTGTT TTTTTTTAAA
  GCTTGGGCAA ACTTACCAGG TCTTATTTAA ATTGGGGATT AGATTTGCTT TCTATCTGCT
  CTACAAGAGT GAATTGGGGC GGGGGGGGGG ATGTTAAAAA AAAAGAGTGA ATTGGTTGGG
  TCAGTAATAA CATATATACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60562181	NES16490566	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	G	G	A	G		G	G	G	G		A
ss325358812	CHEV_17_31270091	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49103835					SNP	G	A	A	A	A	G	G	A	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60562181	NES16490566	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31352120 () rs orientation: forward

Symbol	Name	Function Class
Rr341223	regulatory region 341223	82 bp proximal