rs49103994 SNP Detail

Summary

• ID
  rs49103994
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46321511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGAAGAG TGTCAGAGCT
  TTCAGGCAAG TGGCACTGAT AGACATGGAG ACTTGTGGCT TGGAGGCAAG GCAGAGTGTG
  ACAGAGGCAC AGAGAGGGAA TTTGGAATAA GCACGGAAGC GTGGGTTAGG GCTGTGGGGA
  ACATGGTCCT TAGCATCCTT GTTTATCCCA GCTTCTTGTG GCAGTGTTTC TTTTTAAATT
  W
  TAATTAATGA ATTCACTTAC TTACTTTTAC ATCCAGACTG CGGTTTTTCG TCCTTCCTCT
  CCTCTCAGTC CTTCCTCCAC GCCTTCTCTC TCCTCCATGC ATTCCTCTCC CCTTTCTCTT
  CAGAAAAGGG GAGGCCCGTG GACATACTTC TAATGTTTCA GTTAACAGCC CCCATGTCTG
  CTGGGCATGG GGCTGGGATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149177890	ENSMUSSNP6651577	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49103994					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46321511 () rs orientation: forward

Symbol	Name	Function Class
Tph1	tryptophan hydroxylase 1	within coordinates
Tssr72530	transcription start site region 72530	211 bp downstream
Tssr72531	transcription start site region 72531	297 bp downstream
Tssr72532	transcription start site region 72532	412 bp downstream
Tssr72533	transcription start site region 72533	424 bp downstream
Tssr72534	transcription start site region 72534	440 bp downstream
Tssr72535	transcription start site region 72535	467 bp downstream