rs49106206 SNP Detail

Summary

• ID
  rs49106206
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:51180556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGCGCTCAG CTACCGTCTA GAAAGAACCT CTAACTTTCC
  CACAGAGTTC CAAGTTTTGC TTTGCAAGTG TCAGAAAGGT CAATCTACAA GCTTGGGGAA
  T
  ACTCCCAAGG CTCGAACAGT GAGTGCCTCA ACCTCAGGCG GCCTGCGACA GAGCCGAGCC
  CGGCCGCATA GGGTGCCTCG GGTGGCACCG GCGGGGTAC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss132120099	ENSMUSSNP6678070	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49106206					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51180556 () rs orientation: forward

Symbol	Name	Function Class
Col23a1	collagen, type XXIII, alpha 1	191 bp upstream
Cpgi2834	CpG island 2834	within coordinates
Tssr101277	transcription start site region 101277	9 bp upstream
Tssr101278	transcription start site region 101278	239 bp upstream