rs49106403 SNP Detail

Summary

• ID
  rs49106403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36725232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGGAGTT GTTACAACGA
  GTGTGCCACT GTAGTGTGTT CTAGCTCTGC ATCAGCCCCC ACTTCTGTCT CTATTCTACA
  GGCTTTGAGC AAAATGGTGT ATGCCACCCT CAAAATATGA GGAATAGCTG AAGAAACCTG
  TATTCTGCAT CTTCATCTGC CAACCTCTGG AGACCACTGA CCTATAAACT CCATAAACTC
  Y
  GGCTTTCCCA GACTGTCCCA TGCTGGACTC ATGAGCACCT TGACACAAGT CTTTGGGCTT
  CACTCTGTGG GGAGCCGCAC TCACATTTGC CATTATAAGA TGGCGCTGAC AGCTGTGTTC
  TAAGTAGTAA ATAATCTGCA CATGTGCAGG GGCAGTTTTC CCGCCATGTG CTCTGCCTTT
  TTTGTGATGA CAACTGGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63456924	NES17003133	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49106403					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63456924	NES17003133	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36725232 () rs orientation: forward

Symbol	Name	Function Class
A830021M18Rik	RIKEN cDNA A830021M18 gene	1254 bp upstream
Gm41297	predicted gene, 41297	within coordinates
Gm49263	predicted gene, 49263	within coordinates
Rr306673	regulatory region 306673	1232 bp distal
Tssr131078	transcription start site region 131078	283 bp upstream
Tssr131079	transcription start site region 131079	1332 bp upstream
Tssr131080	transcription start site region 131080	1373 bp upstream
Tssr131081	transcription start site region 131081	1404 bp upstream
Tssr131082	transcription start site region 131082	1679 bp upstream
Tssr131083	transcription start site region 131083	1872 bp upstream
Tssr131084	transcription start site region 131084	1918 bp upstream