rs49106494 SNP Detail

Summary

• ID
  rs49106494
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:62532787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTAGCCT AGAAGAGATT
  CAGGATTGTC TTCCCAAAAT GTGACTTTAG AGACAGGATT AGATGTTCAA GGCAATTATC
  AATTATATGG CATGACCCAG CCTGGCCTTC AGGAGACCTT GTCCTAAGCA GCACTTGTAA
  AAGAAATGGA AAGAAATTCT TATGCCTGCC CCTTTTCCCA TGGGGACTTT GGTGTGCAAT
  K
  GTTGCAAACA GCAGCCTCCT TGGTAGTGTA TGTAGCCTAG TATCTATATG GGCTGCCTCA
  AGGGACCTTG GAGACAATTT TCTGGCAGTT GGTAATCAAG CCTCTGATCA CAATGCTATC
  CCTGATCTAG GCTCCAGACA GGGATGCCTG GTGCCTTTGG GAAGCCCCAG GGCACAGTGG
  CCAGGGTTCA CATTGGCCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61820800	NES17754118	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49106494					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61820800	NES17754118	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:62532787 () rs orientation: forward

Symbol	Name	Function Class
Gm3604	predicted gene 3604	1796 bp upstream
Gm23855	predicted gene, 23855	within coordinates
Gm48690	predicted gene, 48690	131 bp upstream
Gm55564	predicted gene, 55564	1629 bp downstream
Rr281523	regulatory region 281523	1187 bp distal
Rr403806	regulatory region 403806	1599 bp downstream