rs49106693 SNP Detail

Summary

• ID
  rs49106693
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:103831943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGC AGCTATAATT CTGTGAGGGG
  Y
  AGAGCTAGGG CAGCAAGGGG CCTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss138011950	ENSMUSSNP4192537	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49106693					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:103831943 () rs orientation: forward

Symbol	Name	Function Class
Rr471836	regulatory region 471836	1639 bp distal
Tssr117531	transcription start site region 117531	within coordinates
Tssr117532	transcription start site region 117532	42 bp downstream
Tssr117533	transcription start site region 117533	74 bp downstream
Tssr117534	transcription start site region 117534	90 bp downstream