rs49107253 SNP Detail

Summary

• ID
  rs49107253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:69047912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGCGCAGA CGCCTGCTCA CGGGCTACTG GCCCGGCTCC
  GCCTCATCTG CCAGGCTCAC ATCCCTCCCG CCCCGCCAAG GGCAGCAGCT GCTCCCGGCT
  Y
  CAGAGGCATT CGCGGGACAG TGGTTCCCGC TGACTGCTCC ATCACTGACT GCTCCATCAC
  TCTTCGCTGT CTGGCTTCCC TTGTCTACCT CGTTTCTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132350008	ENSMUSSNP608714	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49107253					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69047912 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	mRNA-UTR
Cpgi3111	CpG island 3111	within coordinates
Rr449891	regulatory region 449891	87 bp distal
Rr449892	regulatory region 449892	within coordinates
Rr449893	regulatory region 449893	1023 bp proximal
Tssr102419	transcription start site region 102419	185 bp downstream
Tssr102420	transcription start site region 102420	170 bp downstream
Tssr102421	transcription start site region 102421	35 bp downstream
Tssr102422	transcription start site region 102422	25 bp downstream
Tssr102423	transcription start site region 102423	5 bp downstream
Tssr102424	transcription start site region 102424	within coordinates