rs49107694 SNP Detail

Summary

• ID
  rs49107694
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:21766721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCGT GCACATACCC CTGCATGTAG
  Y
  TATGTACACC TGAGTGCATG TGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	MSM/Ms	SM/J
ss146950476	ENSMUSSNP477858	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss323269394	CHEV_10_21610628	CHEVERUD	SCREENING_POP	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	MSM/Ms	SM/J
rs49107694					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:21766721 () rs orientation: forward

Symbol	Name	Function Class
Rr428788	regulatory region 428788	1222 bp distal
Sgk1	serum/glucocorticoid regulated kinase 1	within coordinates