rs49108109 SNP Detail

Summary

• ID
  rs49108109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:176718677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCCACCA CGTGGTTGCT
  GGGAATTGAA CTCAGGACCT CTGGAAGAGC AGTCAGTGCT CTTAACCTCT GAACCATCTC
  TCCAGTCCCT TAATGTAATA GTTGTTAAGA AGTATATGTC ACATCCAAAT AGGCCAAATA
  ATTCCAATAA AAGACGAAAT GTCTTTATTG CTCTTAGAAT TCATTTTGAT TTGTTTTATA
  Y
  TGTTTCGAGA GTCTTGCTGT ATAGCCCAGT CTGGCCTAGA TCTCACTATG GTTCTTCTTT
  TTTAGCTTCT TAGGAGTTGG AATTACAGGC ACGTGTTACA TTACTGGCTA TATGTTACAT
  TAGGAGTATA TAAACAATGT TTAAATTTTA ATACTAAAAG GTCAGGCTTC TTTAAACCTA
  GAGAAATTAT TTGCATAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60349116	NES15853501	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49108109					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60349116	NES15853501	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176718677 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm37490	predicted gene, 37490			881 bp downstream
Rr423928	regulatory region 423928			219 bp distal
Sdccag8	serologically defined colon cancer antigen 8			Intron
				Noncoding-Transcript-Variant