rs49108119 SNP Detail

Summary

• ID
  rs49108119
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54690241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCCCGG ACTCCTAAGT
  GCTAGAATCA TAGGCATGAA CCATGATGTC TGACAAAAGC TTAGGCTCCC ATTCTGACTA
  AAAAGAGCCT TTGAAGTGCA GGAAAGAAAG AAAGGTTATT TTAGCACATT GCAAACAGTA
  TTATTAGTCC GGTCAGGAGA ACAATTACCA CTGTTATATA ATGCTTTCTG TAAGCCAAGA
  M
  ACTTAATTCT TTGATGTTTC TGTCTTCAGA AGCTAGAAAG ACTGAGATCA GTGTAAATGC
  AAACCAAAGT GCTCAGAGTA GCTTTAGTAG AACCATGATG GCCTTTTAAG ATGCCTTTTA
  AGGGAGGTAA GCTCAATGGC TAAGAGCACT TGCTGCTCTT GCACAGAACC CGGATTTAAT
  TCCCAGTACT CTCATCTGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139563073	ENSMUSSNP1788276	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
ss324637292	CHEV_14_55071621	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49108119					SNP	A	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54690241 () rs orientation: forward

Symbol	Name	Function Class
Rr299430	regulatory region 299430	1761 bp proximal
Rr389675	regulatory region 389675	within coordinates