rs49108149 SNP Detail

Summary

• ID
  rs49108149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:56299347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTAGACAT AGCCTCTCTC
  CTCTCGGCCA CCTACTGACG CACATGTGAC ACAACAGCCA CACCTGCAAT GCCTCTAGGA
  CGTGGACATT GATTCTTAAA AGACAACATT TTACAGTGCA TCACTCAGAT AGACAGACCG
  GCTGATTGCC ACATTTTAAA AAAAAAAAAA AAAACCTCAA ACGATAATAT ATTTTAATTA
  Y
  GTTTGGTAGA TAACTATGGC AATTGACCTA AATCAATTAA ATACAGGGAT AGGGCCAGTG
  TTTAAAACAT GGCCACTACG GTGCTTTCTT GTAGATTGTT TTCGTTAGCC TGGATGGATG
  CTGAGGATGT GATTCTGGCT CTATCCAGCA GGTTCTACAG TTCTGCTCTC TTCAATACCC
  CTGGCAGCTT TGGGGTCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52437181	NES15406595	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49108149					SNP	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52437181	NES15406595	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:56299347 () rs orientation: forward

Symbol	Name	Function Class
Gm19990	predicted gene, 19990	681 bp upstream
Gm25917	predicted gene, 25917	118 bp upstream
Gm47682	predicted gene, 47682	within coordinates
Rr256861	regulatory region 256861	within coordinates
Rr260934	regulatory region 260934	1747 bp distal
Rr267727	regulatory region 267727	within coordinates
Rr267728	regulatory region 267728	1654 bp proximal
Tssr113509	transcription start site region 113509	585 bp upstream
Tssr113510	transcription start site region 113510	626 bp upstream
Tssr113511	transcription start site region 113511	666 bp upstream
Tssr113512	transcription start site region 113512	688 bp upstream