rs49108727 SNP Detail

Summary

• ID
  rs49108727
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:105074101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCG ACCTGGGTAT TGGGGCGAAA
  A
  ACTAATCGAA CCATCTAGTA GCTGG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147491344	ENSMUSSNP4133626	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49108727					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105074101 () rs orientation: forward

Symbol	Name	Function Class
Rr212535	regulatory region 212535	100 bp proximal
Tmtc2	transmembrane and tetratricopeptide repeat containing 2	within coordinates
Tssr95614	transcription start site region 95614	83 bp downstream
Tssr95615	transcription start site region 95615	248 bp upstream