rs49109103 SNP Detail

Summary

• ID
  rs49109103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:34262227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGTTAGA TAATAATTGT
  TGGACTAGCT GGATCATAGC TCATAAATCA CCCCCATATA ACCTGTCTGT GTGTCTGTGT
  ATGTATCTAT GTTTGTGTGT ATATATGTGT ATGTGTGTAT ATGTATATGT GTGTATGTAT
  GTATGTATAT TCATCCTATC AGTTCTGTTT CTCTAGAGAA CTCTGACTAA TATATTACCT
  Y
  ACATGGCTCC AGAAAAATGC AGGACAGTAG ATGTGAAAGC AAGGATAGCT GCCTCATATG
  GAGGATCTGA TGGCACAAAA CCAACTGCAC AGAGCTGGAG AGACAGCTCA ACTATTAAAA
  GCTAGGCTCA CAACCCAAAC CAACCTGCAC TGTGTGGAGA TTTAATAACA CAAACACAGT
  CCATAGTTCC AAGAACAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61134520	NES16640540	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49109103					SNP	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61134520	NES16640540	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:34262227 () rs orientation: forward

Symbol	Name	Function Class
Poln	DNA polymerase N	within coordinates
Tssr50627	transcription start site region 50627	898 bp downstream
Tssr50628	transcription start site region 50628	921 bp downstream