rs49110581 SNP Detail

Summary

• ID
  rs49110581
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174189823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ATATGATTGG GTATGAGAAG GGGGACATAT GGGGAGGCCC
  AACATATGAT TGGGTATGAG ATGGGACACA TGGGGGCCCA ACATATGATT GGGTGTGAGA
  W
  GGGGGACCCA TGGGGGCCCA ACATATGATT GCATGTGAGA TGGGGCACAT GTGGAAAGGC
  CCAACACATG ATTGTGCATG AGATGGGGCA CACATGGGCA G                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148341608	ENSMUSSNP3055599	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49110581					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174189823 () rs orientation: forward

Symbol	Name	Function Class
Gnas	GNAS complex locus	1286 bp downstream
Rr572113	regulatory region 572113	within coordinates
Tssr792	transcription start site region 792	1680 bp downstream
Tssr22139	transcription start site region 22139	1997 bp downstream
Tssr22140	transcription start site region 22140	1716 bp downstream
Tssr22141	transcription start site region 22141	1697 bp downstream
Tssr22142	transcription start site region 22142	1660 bp downstream
Tssr22143	transcription start site region 22143	1515 bp downstream
Tssr22144	transcription start site region 22144	1450 bp downstream
Tssr22145	transcription start site region 22145	1429 bp downstream
Tssr22146	transcription start site region 22146	1392 bp downstream